INFO:    [09/05/2024 14:15:44] -> Initializing Pipeline...
INFO:    [09/05/2024 14:15:44] -> Loading...
INFO:    [04/04/2024 17:20:04] -> Initializing Pipeline...
INFO:    [04/04/2024 17:20:04] -> Preprocessing Run #1 of 12...
INFO:    [04/04/2024 17:20:04] -> Building Spectral Library...
INFO:    [04/04/2024 17:20:05] -> Initializing Experiment...
INFO:    [04/04/2024 17:20:05] -> Loading Spectral Libraries...
INFO:    [04/04/2024 17:20:09] -> Initialize Scoring...
INFO:    [04/04/2024 17:20:09] -> Generating Scan Map...
INFO:    [04/04/2024 17:26:45] -> Initializing Workpackages...
INFO:    [04/04/2024 17:26:45] -> Performing Basic Calibration...
INFO:    [04/04/2024 17:26:45] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 17:26:46] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 17:26:46] -> Initializing Pipeline...
INFO:    [04/04/2024 17:26:46] -> Preprocessing Run #1 of 12...
INFO:    [04/04/2024 17:26:46] -> Initialize Scoring...
INFO:    [04/04/2024 17:26:46] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:26:56] -> Machine Learning...
INFO:    [04/04/2024 17:26:57] -> Pipeline executed in 10.79s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:26:59] -> Initializing Pipeline...
INFO:    [04/04/2024 17:26:59] -> Preprocessing Run #1 of 12...
INFO:    [04/04/2024 17:26:59] -> Initialize Scoring...
INFO:    [04/04/2024 17:26:59] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:27:08] -> Machine Learning...
INFO:    [04/04/2024 17:27:09] -> Pipeline executed in 10.37s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:27:12] -> Initialize Scoring...
INFO:    [04/04/2024 17:27:12] -> Preprocessing Run #2 of 12...
INFO:    [04/04/2024 17:27:12] -> Building Spectral Library...
INFO:    [04/04/2024 17:27:12] -> Initializing Experiment...
INFO:    [04/04/2024 17:27:12] -> Loading Spectral Libraries...
INFO:    [04/04/2024 17:27:12] -> Initialize Scoring...
INFO:    [04/04/2024 17:27:12] -> Generating Scan Map...
INFO:    [04/04/2024 17:37:49] -> Initializing Workpackages...
INFO:    [04/04/2024 17:37:49] -> Performing Basic Calibration...
INFO:    [04/04/2024 17:37:49] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 17:37:49] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 17:37:50] -> Initializing Pipeline...
INFO:    [04/04/2024 17:37:50] -> Preprocessing Run #2 of 12...
INFO:    [04/04/2024 17:37:50] -> Initialize Scoring...
INFO:    [04/04/2024 17:37:50] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:38:14] -> Machine Learning...
INFO:    [04/04/2024 17:38:15] -> Pipeline executed in 24.45s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:38:16] -> Initializing Pipeline...
INFO:    [04/04/2024 17:38:16] -> Preprocessing Run #2 of 12...
INFO:    [04/04/2024 17:38:16] -> Initialize Scoring...
INFO:    [04/04/2024 17:38:16] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:38:34] -> Machine Learning...
INFO:    [04/04/2024 17:38:35] -> Pipeline executed in 18.75s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:38:38] -> Initialize Scoring...
INFO:    [04/04/2024 17:38:38] -> Preprocessing Run #3 of 12...
INFO:    [04/04/2024 17:38:38] -> Building Spectral Library...
INFO:    [04/04/2024 17:38:38] -> Initializing Experiment...
INFO:    [04/04/2024 17:38:38] -> Loading Spectral Libraries...
INFO:    [04/04/2024 17:38:38] -> Initialize Scoring...
INFO:    [04/04/2024 17:38:38] -> Generating Scan Map...
INFO:    [04/04/2024 17:54:19] -> Initializing Workpackages...
INFO:    [04/04/2024 17:54:19] -> Performing Basic Calibration...
INFO:    [04/04/2024 17:54:20] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 17:54:20] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 17:54:20] -> Initializing Pipeline...
INFO:    [04/04/2024 17:54:20] -> Preprocessing Run #3 of 12...
INFO:    [04/04/2024 17:54:20] -> Initialize Scoring...
INFO:    [04/04/2024 17:54:20] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:54:29] -> Machine Learning...
INFO:    [04/04/2024 17:54:29] -> Pipeline executed in 9s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:54:31] -> Initializing Pipeline...
INFO:    [04/04/2024 17:54:31] -> Preprocessing Run #3 of 12...
INFO:    [04/04/2024 17:54:31] -> Initialize Scoring...
INFO:    [04/04/2024 17:54:31] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:54:38] -> Machine Learning...
INFO:    [04/04/2024 17:54:40] -> Pipeline executed in 8.53s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:54:42] -> Initialize Scoring...
INFO:    [04/04/2024 17:54:42] -> Preprocessing Run #4 of 12...
INFO:    [04/04/2024 17:54:42] -> Building Spectral Library...
INFO:    [04/04/2024 17:54:42] -> Initializing Experiment...
INFO:    [04/04/2024 17:54:42] -> Loading Spectral Libraries...
INFO:    [04/04/2024 17:54:42] -> Initialize Scoring...
INFO:    [04/04/2024 17:54:42] -> Generating Scan Map...
INFO:    [04/04/2024 18:00:37] -> Initializing Workpackages...
INFO:    [04/04/2024 18:00:37] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:00:38] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:00:38] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:00:38] -> Initializing Pipeline...
INFO:    [04/04/2024 18:00:38] -> Preprocessing Run #4 of 12...
INFO:    [04/04/2024 18:00:38] -> Initialize Scoring...
INFO:    [04/04/2024 18:00:38] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:00:45] -> Machine Learning...
INFO:    [04/04/2024 18:00:46] -> Pipeline executed in 7.55s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:00:47] -> Initializing Pipeline...
INFO:    [04/04/2024 18:00:47] -> Preprocessing Run #4 of 12...
INFO:    [04/04/2024 18:00:47] -> Initialize Scoring...
INFO:    [04/04/2024 18:00:47] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:00:54] -> Machine Learning...
INFO:    [04/04/2024 18:00:56] -> Pipeline executed in 8.25s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:00:58] -> Initialize Scoring...
INFO:    [04/04/2024 18:00:58] -> Preprocessing Run #5 of 12...
INFO:    [04/04/2024 18:00:58] -> Building Spectral Library...
INFO:    [04/04/2024 18:00:58] -> Initializing Experiment...
INFO:    [04/04/2024 18:00:58] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:00:58] -> Initialize Scoring...
INFO:    [04/04/2024 18:00:58] -> Generating Scan Map...
INFO:    [04/04/2024 18:06:56] -> Initializing Workpackages...
INFO:    [04/04/2024 18:06:56] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:06:57] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:06:57] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:06:57] -> Initializing Pipeline...
INFO:    [04/04/2024 18:06:57] -> Preprocessing Run #5 of 12...
INFO:    [04/04/2024 18:06:57] -> Initialize Scoring...
INFO:    [04/04/2024 18:06:57] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:07:04] -> Machine Learning...
INFO:    [04/04/2024 18:07:05] -> Pipeline executed in 7.53s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:07:06] -> Initializing Pipeline...
INFO:    [04/04/2024 18:07:06] -> Preprocessing Run #5 of 12...
INFO:    [04/04/2024 18:07:06] -> Initialize Scoring...
INFO:    [04/04/2024 18:07:06] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:07:13] -> Machine Learning...
INFO:    [04/04/2024 18:07:14] -> Pipeline executed in 7.93s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:07:16] -> Initialize Scoring...
INFO:    [04/04/2024 18:07:16] -> Preprocessing Run #6 of 12...
INFO:    [04/04/2024 18:07:16] -> Building Spectral Library...
INFO:    [04/04/2024 18:07:16] -> Initializing Experiment...
INFO:    [04/04/2024 18:07:16] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:07:16] -> Initialize Scoring...
INFO:    [04/04/2024 18:07:16] -> Generating Scan Map...
INFO:    [04/04/2024 18:09:52] -> Initializing Workpackages...
INFO:    [04/04/2024 18:09:52] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:09:53] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:09:53] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:09:54] -> Initializing Pipeline...
INFO:    [04/04/2024 18:09:54] -> Preprocessing Run #6 of 12...
INFO:    [04/04/2024 18:09:54] -> Initialize Scoring...
INFO:    [04/04/2024 18:09:54] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:10:01] -> Machine Learning...
INFO:    [04/04/2024 18:10:02] -> Pipeline executed in 8.07s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:10:03] -> Initializing Pipeline...
INFO:    [04/04/2024 18:10:03] -> Preprocessing Run #6 of 12...
INFO:    [04/04/2024 18:10:03] -> Initialize Scoring...
INFO:    [04/04/2024 18:10:03] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:10:11] -> Machine Learning...
INFO:    [04/04/2024 18:10:12] -> Pipeline executed in 8.77s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:10:14] -> Initialize Scoring...
INFO:    [04/04/2024 18:10:14] -> Preprocessing Run #7 of 12...
INFO:    [04/04/2024 18:10:14] -> Building Spectral Library...
INFO:    [04/04/2024 18:10:14] -> Initializing Experiment...
INFO:    [04/04/2024 18:10:14] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:10:14] -> Initialize Scoring...
INFO:    [04/04/2024 18:10:14] -> Generating Scan Map...
INFO:    [04/04/2024 18:14:26] -> Initializing Workpackages...
INFO:    [04/04/2024 18:14:26] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:14:27] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:14:27] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:14:27] -> Initializing Pipeline...
INFO:    [04/04/2024 18:14:27] -> Preprocessing Run #7 of 12...
INFO:    [04/04/2024 18:14:27] -> Initialize Scoring...
INFO:    [04/04/2024 18:14:27] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:14:34] -> Machine Learning...
INFO:    [04/04/2024 18:14:35] -> Pipeline executed in 7.62s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:14:36] -> Initializing Pipeline...
INFO:    [04/04/2024 18:14:36] -> Preprocessing Run #7 of 12...
INFO:    [04/04/2024 18:14:36] -> Initialize Scoring...
INFO:    [04/04/2024 18:14:36] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:14:43] -> Machine Learning...
INFO:    [04/04/2024 18:14:44] -> Pipeline executed in 7.77s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:14:46] -> Initialize Scoring...
INFO:    [04/04/2024 18:14:46] -> Preprocessing Run #8 of 12...
INFO:    [04/04/2024 18:14:46] -> Building Spectral Library...
INFO:    [04/04/2024 18:14:46] -> Initializing Experiment...
INFO:    [04/04/2024 18:14:46] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:14:46] -> Initialize Scoring...
INFO:    [04/04/2024 18:14:46] -> Generating Scan Map...
INFO:    [04/04/2024 18:17:31] -> Initializing Workpackages...
INFO:    [04/04/2024 18:17:31] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:17:31] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:17:31] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:17:32] -> Initializing Pipeline...
INFO:    [04/04/2024 18:17:32] -> Preprocessing Run #8 of 12...
INFO:    [04/04/2024 18:17:32] -> Initialize Scoring...
INFO:    [04/04/2024 18:17:32] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:17:39] -> Machine Learning...
INFO:    [04/04/2024 18:17:39] -> Pipeline executed in 7.45s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:17:41] -> Initializing Pipeline...
INFO:    [04/04/2024 18:17:41] -> Preprocessing Run #8 of 12...
INFO:    [04/04/2024 18:17:41] -> Initialize Scoring...
INFO:    [04/04/2024 18:17:41] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:17:47] -> Machine Learning...
INFO:    [04/04/2024 18:17:48] -> Pipeline executed in 7.74s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:17:50] -> Initialize Scoring...
INFO:    [04/04/2024 18:17:50] -> Preprocessing Run #9 of 12...
INFO:    [04/04/2024 18:17:50] -> Building Spectral Library...
INFO:    [04/04/2024 18:17:50] -> Initializing Experiment...
INFO:    [04/04/2024 18:17:50] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:17:50] -> Initialize Scoring...
INFO:    [04/04/2024 18:17:50] -> Generating Scan Map...
INFO:    [04/04/2024 18:23:58] -> Initializing Workpackages...
INFO:    [04/04/2024 18:23:58] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:23:59] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:23:59] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:24:00] -> Initializing Pipeline...
INFO:    [04/04/2024 18:24:00] -> Preprocessing Run #9 of 12...
INFO:    [04/04/2024 18:24:00] -> Initialize Scoring...
INFO:    [04/04/2024 18:24:00] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:24:07] -> Machine Learning...
INFO:    [04/04/2024 18:24:08] -> Pipeline executed in 8.24s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:24:09] -> Initializing Pipeline...
INFO:    [04/04/2024 18:24:09] -> Preprocessing Run #9 of 12...
INFO:    [04/04/2024 18:24:09] -> Initialize Scoring...
INFO:    [04/04/2024 18:24:09] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:24:17] -> Machine Learning...
INFO:    [04/04/2024 18:24:18] -> Pipeline executed in 8.97s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:24:21] -> Initialize Scoring...
INFO:    [04/04/2024 18:24:21] -> Preprocessing Run #10 of 12...
INFO:    [04/04/2024 18:24:21] -> Building Spectral Library...
INFO:    [04/04/2024 18:24:21] -> Initializing Experiment...
INFO:    [04/04/2024 18:24:21] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:24:21] -> Initialize Scoring...
INFO:    [04/04/2024 18:24:21] -> Generating Scan Map...
INFO:    [04/04/2024 18:26:39] -> Initializing Workpackages...
INFO:    [04/04/2024 18:26:39] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:26:40] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:26:40] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:26:40] -> Initializing Pipeline...
INFO:    [04/04/2024 18:26:40] -> Preprocessing Run #10 of 12...
INFO:    [04/04/2024 18:26:40] -> Initialize Scoring...
INFO:    [04/04/2024 18:26:40] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:26:48] -> Machine Learning...
INFO:    [04/04/2024 18:26:48] -> Pipeline executed in 8.14s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:26:50] -> Initializing Pipeline...
INFO:    [04/04/2024 18:26:50] -> Preprocessing Run #10 of 12...
INFO:    [04/04/2024 18:26:50] -> Initialize Scoring...
INFO:    [04/04/2024 18:26:50] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:26:58] -> Machine Learning...
INFO:    [04/04/2024 18:26:59] -> Pipeline executed in 9.36s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:27:02] -> Initialize Scoring...
INFO:    [04/04/2024 18:27:02] -> Preprocessing Run #11 of 12...
INFO:    [04/04/2024 18:27:02] -> Building Spectral Library...
INFO:    [04/04/2024 18:27:02] -> Initializing Experiment...
INFO:    [04/04/2024 18:27:02] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:27:02] -> Initialize Scoring...
INFO:    [04/04/2024 18:27:02] -> Generating Scan Map...
INFO:    [04/04/2024 18:30:53] -> Initializing Workpackages...
INFO:    [04/04/2024 18:30:53] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:30:54] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:30:54] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:30:54] -> Initializing Pipeline...
INFO:    [04/04/2024 18:30:54] -> Preprocessing Run #11 of 12...
INFO:    [04/04/2024 18:30:54] -> Initialize Scoring...
INFO:    [04/04/2024 18:30:54] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:31:03] -> Machine Learning...
INFO:    [04/04/2024 18:31:03] -> Pipeline executed in 8.97s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:31:05] -> Initializing Pipeline...
INFO:    [04/04/2024 18:31:05] -> Preprocessing Run #11 of 12...
INFO:    [04/04/2024 18:31:05] -> Initialize Scoring...
INFO:    [04/04/2024 18:31:05] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:31:14] -> Machine Learning...
INFO:    [04/04/2024 18:31:15] -> Pipeline executed in 10.28s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:31:17] -> Initialize Scoring...
INFO:    [04/04/2024 18:31:17] -> Preprocessing Run #12 of 12...
INFO:    [04/04/2024 18:31:17] -> Building Spectral Library...
INFO:    [04/04/2024 18:31:17] -> Initializing Experiment...
INFO:    [04/04/2024 18:31:17] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:31:17] -> Initialize Scoring...
INFO:    [04/04/2024 18:31:17] -> Generating Scan Map...
INFO:    [04/04/2024 18:37:01] -> Initializing Workpackages...
INFO:    [04/04/2024 18:37:01] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:37:01] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:37:01] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:37:02] -> Initializing Pipeline...
INFO:    [04/04/2024 18:37:02] -> Preprocessing Run #12 of 12...
INFO:    [04/04/2024 18:37:02] -> Initialize Scoring...
INFO:    [04/04/2024 18:37:02] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:37:09] -> Machine Learning...
INFO:    [04/04/2024 18:37:09] -> Pipeline executed in 7.54s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:37:11] -> Initializing Pipeline...
INFO:    [04/04/2024 18:37:11] -> Preprocessing Run #12 of 12...
INFO:    [04/04/2024 18:37:11] -> Initialize Scoring...
INFO:    [04/04/2024 18:37:11] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:37:17] -> Machine Learning...
INFO:    [04/04/2024 18:37:19] -> Pipeline executed in 7.94s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:37:20] -> Initialize Scoring...
INFO:    [04/04/2024 18:37:20] -> Initializing QC...
INFO:    [04/04/2024 18:37:20] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:37:20] -> Assigning ML Features...
INFO:    [04/04/2024 18:37:21] -> Generating Decoys...
INFO:    [04/04/2024 18:37:23] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:37:55] -> Releasing Raw Files...
INFO:    [04/04/2024 18:37:55] -> Machine Learning...
INFO:    [04/04/2024 18:38:07] -> Initializing HTRMS...
INFO:    [04/04/2024 18:38:07] -> Releasing Run Resources...
INFO:    [04/04/2024 18:38:07] -> Calculating Qvalues...
INFO:    [04/04/2024 18:38:07] -> Unique precursors: 27,617 of 30,794 | modified peptides: 24,393 of 27,225 | peptides: 24,085 of 26,833 |  protein groups: 3,582 (Qvalue <= 0.01) [001_Kalra01_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:38:07] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:38:07] -> Processed in 46.85s
INFO:    [04/04/2024 18:38:07] -> Initializing QC...
INFO:    [04/04/2024 18:38:07] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:38:07] -> Assigning ML Features...
INFO:    [04/04/2024 18:38:07] -> Generating Decoys...
INFO:    [04/04/2024 18:38:07] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:38:42] -> Releasing Raw Files...
INFO:    [04/04/2024 18:38:43] -> Machine Learning...
INFO:    [04/04/2024 18:38:53] -> Initializing HTRMS...
INFO:    [04/04/2024 18:38:53] -> Releasing Run Resources...
INFO:    [04/04/2024 18:38:53] -> Calculating Qvalues...
INFO:    [04/04/2024 18:38:53] -> Unique precursors: 27,589 of 30,794 | modified peptides: 24,336 of 27,225 | peptides: 24,009 of 26,833 |  protein groups: 3,608 (Qvalue <= 0.01) [002_Kalra02_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:38:53] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:38:53] -> Processed in 46.27s
INFO:    [04/04/2024 18:38:53] -> Initializing QC...
INFO:    [04/04/2024 18:38:53] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:38:53] -> Assigning ML Features...
INFO:    [04/04/2024 18:38:53] -> Generating Decoys...
INFO:    [04/04/2024 18:38:54] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:39:28] -> Releasing Raw Files...
INFO:    [04/04/2024 18:39:29] -> Machine Learning...
INFO:    [04/04/2024 18:39:40] -> Initializing HTRMS...
INFO:    [04/04/2024 18:39:40] -> Releasing Run Resources...
INFO:    [04/04/2024 18:39:40] -> Calculating Qvalues...
INFO:    [04/04/2024 18:39:40] -> Unique precursors: 27,620 of 30,794 | modified peptides: 24,455 of 27,225 | peptides: 24,135 of 26,833 |  protein groups: 3,649 (Qvalue <= 0.01) [003_Kalra03_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:39:40] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:39:41] -> Processed in 47.16s
INFO:    [04/04/2024 18:39:41] -> Initializing QC...
INFO:    [04/04/2024 18:39:41] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:39:41] -> Assigning ML Features...
INFO:    [04/04/2024 18:39:41] -> Generating Decoys...
INFO:    [04/04/2024 18:39:41] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:40:14] -> Releasing Raw Files...
INFO:    [04/04/2024 18:40:15] -> Machine Learning...
INFO:    [04/04/2024 18:40:26] -> Initializing HTRMS...
INFO:    [04/04/2024 18:40:26] -> Releasing Run Resources...
INFO:    [04/04/2024 18:40:26] -> Calculating Qvalues...
INFO:    [04/04/2024 18:40:26] -> Unique precursors: 24,412 of 30,794 | modified peptides: 21,724 of 27,225 | peptides: 21,439 of 26,833 |  protein groups: 3,342 (Qvalue <= 0.01) [004_Kalra04_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:40:26] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:40:27] -> Processed in 45.95s
INFO:    [04/04/2024 18:40:27] -> Initializing QC...
INFO:    [04/04/2024 18:40:27] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:40:27] -> Assigning ML Features...
INFO:    [04/04/2024 18:40:27] -> Generating Decoys...
INFO:    [04/04/2024 18:40:27] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:41:02] -> Releasing Raw Files...
INFO:    [04/04/2024 18:41:03] -> Machine Learning...
INFO:    [04/04/2024 18:41:11] -> Initializing HTRMS...
INFO:    [04/04/2024 18:41:11] -> Releasing Run Resources...
INFO:    [04/04/2024 18:41:11] -> Calculating Qvalues...
INFO:    [04/04/2024 18:41:11] -> Unique precursors: 27,337 of 30,794 | modified peptides: 24,122 of 27,225 | peptides: 23,845 of 26,833 |  protein groups: 3,549 (Qvalue <= 0.01) [001_Kalra01_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:41:11] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:41:12] -> Processed in 45.02s
INFO:    [04/04/2024 18:41:12] -> Initializing QC...
INFO:    [04/04/2024 18:41:12] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:41:12] -> Assigning ML Features...
INFO:    [04/04/2024 18:41:12] -> Generating Decoys...
INFO:    [04/04/2024 18:41:12] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:41:45] -> Releasing Raw Files...
INFO:    [04/04/2024 18:41:46] -> Machine Learning...
INFO:    [04/04/2024 18:41:56] -> Initializing HTRMS...
INFO:    [04/04/2024 18:41:56] -> Releasing Run Resources...
INFO:    [04/04/2024 18:41:56] -> Calculating Qvalues...
INFO:    [04/04/2024 18:41:57] -> Unique precursors: 27,299 of 30,794 | modified peptides: 24,116 of 27,225 | peptides: 23,814 of 26,833 |  protein groups: 3,576 (Qvalue <= 0.01) [002_Kalra02_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:41:57] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:41:57] -> Processed in 45.08s
INFO:    [04/04/2024 18:41:57] -> Initializing QC...
INFO:    [04/04/2024 18:41:57] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:41:57] -> Assigning ML Features...
INFO:    [04/04/2024 18:41:57] -> Generating Decoys...
INFO:    [04/04/2024 18:41:57] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:42:30] -> Releasing Raw Files...
INFO:    [04/04/2024 18:42:31] -> Machine Learning...
INFO:    [04/04/2024 18:42:41] -> Initializing HTRMS...
INFO:    [04/04/2024 18:42:41] -> Releasing Run Resources...
INFO:    [04/04/2024 18:42:41] -> Calculating Qvalues...
INFO:    [04/04/2024 18:42:41] -> Unique precursors: 25,731 of 30,794 | modified peptides: 22,728 of 27,225 | peptides: 22,454 of 26,833 |  protein groups: 3,456 (Qvalue <= 0.01) [003_Kalra03_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:42:41] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:42:41] -> Processed in 44.82s
INFO:    [04/04/2024 18:42:41] -> Initializing QC...
INFO:    [04/04/2024 18:42:41] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:42:42] -> Assigning ML Features...
INFO:    [04/04/2024 18:42:42] -> Generating Decoys...
INFO:    [04/04/2024 18:42:42] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:43:16] -> Releasing Raw Files...
INFO:    [04/04/2024 18:43:16] -> Machine Learning...
INFO:    [04/04/2024 18:43:28] -> Initializing HTRMS...
INFO:    [04/04/2024 18:43:28] -> Releasing Run Resources...
INFO:    [04/04/2024 18:43:28] -> Calculating Qvalues...
INFO:    [04/04/2024 18:43:28] -> Unique precursors: 22,541 of 30,794 | modified peptides: 20,017 of 27,225 | peptides: 19,791 of 26,833 |  protein groups: 3,187 (Qvalue <= 0.01) [004_Kalra04_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:43:28] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:43:28] -> Processed in 46.47s
INFO:    [04/04/2024 18:43:28] -> Initializing QC...
INFO:    [04/04/2024 18:43:28] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:43:28] -> Assigning ML Features...
INFO:    [04/04/2024 18:43:28] -> Generating Decoys...
INFO:    [04/04/2024 18:43:28] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:44:03] -> Releasing Raw Files...
INFO:    [04/04/2024 18:44:04] -> Machine Learning...
INFO:    [04/04/2024 18:44:15] -> Initializing HTRMS...
INFO:    [04/04/2024 18:44:15] -> Releasing Run Resources...
INFO:    [04/04/2024 18:44:15] -> Calculating Qvalues...
INFO:    [04/04/2024 18:44:15] -> Unique precursors: 28,142 of 30,794 | modified peptides: 24,876 of 27,225 | peptides: 24,557 of 26,833 |  protein groups: 3,650 (Qvalue <= 0.01) [001_Kalra01_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:44:15] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:44:15] -> Processed in 47.21s
INFO:    [04/04/2024 18:44:15] -> Initializing QC...
INFO:    [04/04/2024 18:44:15] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:44:15] -> Assigning ML Features...
INFO:    [04/04/2024 18:44:15] -> Generating Decoys...
INFO:    [04/04/2024 18:44:15] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:44:50] -> Releasing Raw Files...
INFO:    [04/04/2024 18:44:50] -> Machine Learning...
INFO:    [04/04/2024 18:45:01] -> Initializing HTRMS...
INFO:    [04/04/2024 18:45:01] -> Releasing Run Resources...
INFO:    [04/04/2024 18:45:01] -> Calculating Qvalues...
INFO:    [04/04/2024 18:45:02] -> Unique precursors: 28,962 of 30,794 | modified peptides: 25,585 of 27,225 | peptides: 25,249 of 26,833 |  protein groups: 3,730 (Qvalue <= 0.01) [002_Kalra02_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:45:02] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:45:02] -> Processed in 46.54s
INFO:    [04/04/2024 18:45:02] -> Initializing QC...
INFO:    [04/04/2024 18:45:02] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:45:02] -> Assigning ML Features...
INFO:    [04/04/2024 18:45:02] -> Generating Decoys...
INFO:    [04/04/2024 18:45:02] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:45:38] -> Releasing Raw Files...
INFO:    [04/04/2024 18:45:38] -> Machine Learning...
INFO:    [04/04/2024 18:45:50] -> Initializing HTRMS...
INFO:    [04/04/2024 18:45:50] -> Releasing Run Resources...
INFO:    [04/04/2024 18:45:50] -> Calculating Qvalues...
INFO:    [04/04/2024 18:45:50] -> Unique precursors: 28,474 of 30,794 | modified peptides: 25,147 of 27,225 | peptides: 24,822 of 26,833 |  protein groups: 3,671 (Qvalue <= 0.01) [003_Kalra03_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:45:50] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:45:50] -> Processed in 48.55s
INFO:    [04/04/2024 18:45:50] -> Initializing QC...
INFO:    [04/04/2024 18:45:50] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:45:50] -> Assigning ML Features...
INFO:    [04/04/2024 18:45:50] -> Generating Decoys...
INFO:    [04/04/2024 18:45:50] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:46:25] -> Releasing Raw Files...
INFO:    [04/04/2024 18:46:26] -> Machine Learning...
INFO:    [04/04/2024 18:46:37] -> Initializing HTRMS...
INFO:    [04/04/2024 18:46:37] -> Releasing Run Resources...
INFO:    [04/04/2024 18:46:38] -> Calculating Qvalues...
INFO:    [04/04/2024 18:46:38] -> Unique precursors: 22,446 of 30,794 | modified peptides: 19,915 of 27,225 | peptides: 19,665 of 26,833 |  protein groups: 3,190 (Qvalue <= 0.01) [004_Kalra04_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:46:38] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:46:38] -> Processed in 47.5s
INFO:    [04/04/2024 18:46:38] -> Normalizing Cscores...
INFO:    [04/04/2024 18:46:38] -> Initializing Protein Groups...
INFO:    [04/04/2024 18:46:47] -> Correcting Interferences...
INFO:    [04/04/2024 18:46:58] -> Calculating Global CVs
INFO:    [04/04/2024 18:46:58] -> Calculating Precursor Quantities...
INFO:    [04/04/2024 18:46:58] -> Normalizing Quantification...
INFO:    [04/04/2024 18:46:59] -> Performing Local Normalization...
INFO:    [04/04/2024 18:46:59] -> Calculating Global CVs
INFO:    [04/04/2024 18:46:59] -> Calculating Condition CVs
INFO:    [04/04/2024 18:47:00] -> Excluding Library Duplicates...
INFO:    [04/04/2024 18:47:01] -> Calculating Global CVs
INFO:    [04/04/2024 18:47:01] -> Building Protein Groups...
INFO:    [04/04/2024 18:47:08] -> Calculating Run-Wise Protein Group FDR...
INFO:    [04/04/2024 18:47:09] -> Annotating Protein Single Hits...
INFO:    [04/04/2024 18:47:10] -> Calculating Global CVs
INFO:    [04/04/2024 18:47:10] -> Updating Identification Counts...
INFO:    [04/04/2024 18:47:10] -> Resetting existing imputation...
INFO:    [04/04/2024 18:47:10] -> Calculating Protein Quantities...
INFO:    [04/04/2024 18:47:11] -> Calculating Protein Quantities...
INFO:    [04/04/2024 18:47:11] -> Calculating MaxLFQ Protein Quantities...
INFO:    [04/04/2024 18:47:14] -> Collapsing PTM-Locations...
INFO:    [04/04/2024 18:47:14] -> Creating Protein Map...
INFO:    [04/04/2024 18:47:14] -> Compiling Run Summary Information...
INFO:    [04/04/2024 18:47:14] -> Running Post Analysis Processes...
INFO:    [04/04/2024 18:47:20] -> Saving Qc Data...
INFO:    [04/04/2024 18:47:20] -> Writing Summary Information...
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,424 of 30,794 | modified peptides: 24,200 of 27,225 | peptides: 23,892 of 26,833 |  protein groups: 3,400 (Qvalue <= 0.01) for run #1 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,391 of 30,794 | modified peptides: 24,138 of 27,225 | peptides: 23,811 of 26,833 |  protein groups: 3,422 (Qvalue <= 0.01) for run #2 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,414 of 30,794 | modified peptides: 24,250 of 27,225 | peptides: 23,930 of 26,833 |  protein groups: 3,467 (Qvalue <= 0.01) for run #3 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 24,256 of 30,794 | modified peptides: 21,568 of 27,225 | peptides: 21,283 of 26,833 |  protein groups: 3,197 (Qvalue <= 0.01) for run #4 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,130 of 30,794 | modified peptides: 23,915 of 27,225 | peptides: 23,638 of 26,833 |  protein groups: 3,359 (Qvalue <= 0.01) for run #5 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,113 of 30,794 | modified peptides: 23,930 of 27,225 | peptides: 23,628 of 26,833 |  protein groups: 3,406 (Qvalue <= 0.01) for run #6 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 25,527 of 30,794 | modified peptides: 22,524 of 27,225 | peptides: 22,250 of 26,833 |  protein groups: 3,269 (Qvalue <= 0.01) for run #7 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 22,421 of 30,794 | modified peptides: 19,897 of 27,225 | peptides: 19,671 of 26,833 |  protein groups: 3,074 (Qvalue <= 0.01) for run #8 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,948 of 30,794 | modified peptides: 24,682 of 27,225 | peptides: 24,363 of 26,833 |  protein groups: 3,472 (Qvalue <= 0.01) for run #9 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 28,730 of 30,794 | modified peptides: 25,353 of 27,225 | peptides: 25,017 of 26,833 |  protein groups: 3,527 (Qvalue <= 0.01) for run #10 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 28,260 of 30,794 | modified peptides: 24,933 of 27,225 | peptides: 24,608 of 26,833 |  protein groups: 3,478 (Qvalue <= 0.01) for run #11 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 22,336 of 30,794 | modified peptides: 19,805 of 27,225 | peptides: 19,555 of 26,833 |  protein groups: 3,081 (Qvalue <= 0.01) for run #12 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 30,438 of 30,794 | modified peptides: 26,874 of 27,225 | peptides: 26,483 of 26,833 |  protein groups: 3,604 (Qvalue <= 0.01) for whole experiment "dia-riken-test"

INFO:    [04/04/2024 18:47:20] -> Saving SNE File...
INFO:    [04/04/2024 18:47:20] -> Automatic SNE storage disabled
INFO:    [04/04/2024 18:47:20] -> Current Experiment had 2 Warnings and 0 Errors.
INFO:    [04/04/2024 18:47:20] -> Pipeline executed in 1.45h - Current Experiment had 2 Warnings and 0 Errors.
INFO:    [05/04/2024 13:20:58] -> Initializing Pipeline...
INFO:    [05/04/2024 13:20:58] -> Calculating Qvalues...
INFO:    [05/04/2024 13:20:58] -> Saving...
INFO:    [09/05/2024 14:16:05] -> Updating Quantities...
INFO:    [09/05/2024 14:16:05] -> Unifying Meta...
INFO:    [09/05/2024 14:16:05] -> Normalizing Cscores...
INFO:    [09/05/2024 14:16:05] -> Calculating Global CVs
INFO:    [09/05/2024 14:16:05] -> Linking References...
INFO:    [09/05/2024 14:16:05] -> Initializing Protein Groups...
INFO:    [09/05/2024 14:16:10] -> Building Protein Groups...
INFO:    [09/05/2024 14:16:10] -> Calculating Run-Wise Protein Group FDR...
INFO:    [09/05/2024 14:16:11] -> Annotating Protein Single Hits...
INFO:    [09/05/2024 14:16:11] -> Normalizing Quantification...
INFO:    [09/05/2024 14:16:11] -> Calculating Global CVs
INFO:    [09/05/2024 14:16:12] -> Updating Identification Counts...
INFO:    [09/05/2024 14:16:12] -> Resetting existing imputation...
INFO:    [09/05/2024 14:16:12] -> Calculating Protein Quantities...
INFO:    [09/05/2024 14:16:12] -> Calculating Protein Quantities...
INFO:    [09/05/2024 14:16:12] -> Calculating MaxLFQ Protein Quantities...
INFO:    [09/05/2024 14:16:14] -> Collapsing PTM-Locations...
INFO:    [09/05/2024 14:16:14] -> Calculating Condition CVs
INFO:    [09/05/2024 14:16:14] -> Creating Protein Map...
INFO:    [09/05/2024 14:16:14] -> Compiling Run Summary Information...
INFO:    [09/05/2024 14:16:14] -> Running Post Analysis Processes...
INFO:    [09/05/2024 14:16:19] -> Writing Summary Information...
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,424 of 30,794 | modified peptides: 24,200 of 27,225 | peptides: 23,892 of 26,833 |  protein groups: 3,400 (Qvalue <= 0.01) for run #1 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,391 of 30,794 | modified peptides: 24,138 of 27,225 | peptides: 23,811 of 26,833 |  protein groups: 3,422 (Qvalue <= 0.01) for run #2 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,414 of 30,794 | modified peptides: 24,250 of 27,225 | peptides: 23,930 of 26,833 |  protein groups: 3,467 (Qvalue <= 0.01) for run #3 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 24,256 of 30,794 | modified peptides: 21,568 of 27,225 | peptides: 21,283 of 26,833 |  protein groups: 3,197 (Qvalue <= 0.01) for run #4 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,130 of 30,794 | modified peptides: 23,915 of 27,225 | peptides: 23,638 of 26,833 |  protein groups: 3,359 (Qvalue <= 0.01) for run #5 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,113 of 30,794 | modified peptides: 23,930 of 27,225 | peptides: 23,628 of 26,833 |  protein groups: 3,406 (Qvalue <= 0.01) for run #6 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 25,527 of 30,794 | modified peptides: 22,524 of 27,225 | peptides: 22,250 of 26,833 |  protein groups: 3,269 (Qvalue <= 0.01) for run #7 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 22,421 of 30,794 | modified peptides: 19,897 of 27,225 | peptides: 19,671 of 26,833 |  protein groups: 3,074 (Qvalue <= 0.01) for run #8 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,948 of 30,794 | modified peptides: 24,682 of 27,225 | peptides: 24,363 of 26,833 |  protein groups: 3,472 (Qvalue <= 0.01) for run #9 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 28,730 of 30,794 | modified peptides: 25,353 of 27,225 | peptides: 25,017 of 26,833 |  protein groups: 3,527 (Qvalue <= 0.01) for run #10 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 28,260 of 30,794 | modified peptides: 24,933 of 27,225 | peptides: 24,608 of 26,833 |  protein groups: 3,478 (Qvalue <= 0.01) for run #11 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 22,336 of 30,794 | modified peptides: 19,805 of 27,225 | peptides: 19,555 of 26,833 |  protein groups: 3,081 (Qvalue <= 0.01) for run #12 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 30,438 of 30,794 | modified peptides: 26,874 of 27,225 | peptides: 26,483 of 26,833 |  protein groups: 3,604 (Qvalue <= 0.01) for whole experiment "dia-riken-test"

INFO:    [09/05/2024 14:16:19] -> Current Experiment had 0 Warnings and 0 Errors.
INFO:    [09/05/2024 14:16:19] -> Pipeline executed in 34.81s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [09/05/2024 14:16:45] -> Initializing Pipeline...
INFO:    [09/05/2024 14:16:46] -> Generating Scan Map...
INFO:    [09/05/2024 14:17:38] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:17:40] -> Releasing Raw Files...
INFO:    [09/05/2024 14:17:40] -> Initializing HTRMS...
INFO:    [09/05/2024 14:17:40] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:17:40] -> Processed in 55.33s
INFO:    [09/05/2024 14:17:40] -> Generating Scan Map...
INFO:    [09/05/2024 14:19:09] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:19:11] -> Releasing Raw Files...
INFO:    [09/05/2024 14:19:11] -> Initializing HTRMS...
INFO:    [09/05/2024 14:19:12] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:19:12] -> Processed in 1.52m
INFO:    [09/05/2024 14:19:12] -> Generating Scan Map...
INFO:    [09/05/2024 14:20:22] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:20:23] -> Releasing Raw Files...
INFO:    [09/05/2024 14:20:24] -> Initializing HTRMS...
INFO:    [09/05/2024 14:20:24] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:20:24] -> Processed in 1.21m
INFO:    [09/05/2024 14:20:24] -> Generating Scan Map...
INFO:    [09/05/2024 14:21:20] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:21:21] -> Releasing Raw Files...
INFO:    [09/05/2024 14:21:21] -> Initializing HTRMS...
INFO:    [09/05/2024 14:21:21] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:21:22] -> Processed in 57.24s
INFO:    [09/05/2024 14:21:22] -> Generating Scan Map...
INFO:    [09/05/2024 14:22:10] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:22:11] -> Releasing Raw Files...
INFO:    [09/05/2024 14:22:11] -> Initializing HTRMS...
INFO:    [09/05/2024 14:22:11] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:22:12] -> Processed in 50.02s
INFO:    [09/05/2024 14:22:12] -> Generating Scan Map...
INFO:    [09/05/2024 14:23:05] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:23:06] -> Releasing Raw Files...
INFO:    [09/05/2024 14:23:06] -> Initializing HTRMS...
INFO:    [09/05/2024 14:23:06] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:23:07] -> Processed in 55s
INFO:    [09/05/2024 14:23:07] -> Generating Scan Map...
INFO:    [09/05/2024 14:23:54] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:23:55] -> Releasing Raw Files...
INFO:    [09/05/2024 14:23:55] -> Initializing HTRMS...
INFO:    [09/05/2024 14:23:56] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:23:56] -> Processed in 49.16s
INFO:    [09/05/2024 14:23:56] -> Generating Scan Map...
INFO:    [09/05/2024 14:24:33] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:24:34] -> Releasing Raw Files...
INFO:    [09/05/2024 14:24:34] -> Initializing HTRMS...
INFO:    [09/05/2024 14:24:35] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:24:35] -> Processed in 39.09s
INFO:    [09/05/2024 14:24:35] -> Generating Scan Map...
INFO:    [09/05/2024 14:25:46] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:25:48] -> Releasing Raw Files...
INFO:    [09/05/2024 14:25:48] -> Initializing HTRMS...
INFO:    [09/05/2024 14:25:48] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:25:48] -> Processed in 1.23m
INFO:    [09/05/2024 14:25:48] -> Generating Scan Map...
INFO:    [09/05/2024 14:26:55] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:26:57] -> Releasing Raw Files...
INFO:    [09/05/2024 14:26:57] -> Initializing HTRMS...
INFO:    [09/05/2024 14:26:58] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:26:58] -> Processed in 1.15m
INFO:    [09/05/2024 14:26:58] -> Generating Scan Map...
INFO:    [09/05/2024 14:28:16] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:28:17] -> Releasing Raw Files...
INFO:    [09/05/2024 14:28:18] -> Initializing HTRMS...
INFO:    [09/05/2024 14:28:18] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:28:18] -> Processed in 1.34m
INFO:    [09/05/2024 14:28:18] -> Generating Scan Map...
INFO:    [09/05/2024 14:29:15] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:29:17] -> Releasing Raw Files...
INFO:    [09/05/2024 14:29:17] -> Initializing HTRMS...
INFO:    [09/05/2024 14:29:17] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:29:17] -> Processed in 58.96s
INFO:    [09/05/2024 14:29:17] -> Current Experiment had 0 Warnings and 0 Errors.
INFO:    [09/05/2024 14:29:17] -> Pipeline executed in 12.54m - Current Experiment had 0 Warnings and 0 Errors.
